|
| template<class ForwardIt1 , class ForwardIt2 , class URBG > |
| ForwardIt2 | genetics::sequence::crossover (ForwardIt1 first1, ForwardIt1 last1, ForwardIt2 first2, URBG &&g) |
| | Exchanges elements between two ranges, starting at a random offset. More...
|
| |
| template<class ForwardIt1 , class ForwardIt2 , class Size , class URBG > |
| void | genetics::sequence::crossover_n (ForwardIt1 first1, ForwardIt1 last1, ForwardIt2 first2, Size count, URBG &&g) |
| | Exchanges elements between two ranges multiple times, starting at a random offset each time. More...
|
| |
| template<class ForwardIt > |
| orf< ForwardIt > | genetics::sequence::find_orf (ForwardIt first, ForwardIt last, const codon::table &table) |
| | Searches a sequence for an open reading frame (ORF). More...
|
| |
| template<class ForwardIt , class UnaryOperation , class URBG > |
| ForwardIt | genetics::sequence::mutate (ForwardIt first, ForwardIt last, UnaryOperation unary_op, URBG &&g) |
| | Applies the given function to a randomly selected element in a range. More...
|
| |
| template<class ForwardIt , class Size , class UnaryOperation , class URBG > |
| void | genetics::sequence::mutate_n (ForwardIt first, ForwardIt last, Size count, UnaryOperation unary_op, URBG &&g) |
| | Applies the given function to a random selection of elements in a range. More...
|
| |
| template<class ForwardIt1 , class ForwardIt2 > |
| ForwardIt1 | genetics::sequence::search (ForwardIt1 first, ForwardIt1 last, ForwardIt2 s_first, ForwardIt2 s_last, typename std::iterator_traits< ForwardIt1 >::difference_type stride) |
| | Searches a sequence of IUPAC base symbols for a pattern matching a search string of IUPAC degenerate base symbols. More...
|
| |
| template<class InputIt , class OutputIt > |
| OutputIt | genetics::sequence::transcribe (InputIt first, InputIt last, OutputIt d_first) |
| | Transcribes a sequence of IUPAC base symbols between DNA and RNA, swapping T for U or U for T. More...
|
| |
| template<class InputIt , class OutputIt > |
| OutputIt | genetics::sequence::translate (InputIt first, InputIt last, OutputIt d_first, const codon::table &table) |
| | Translates a sequence of codons into amino acids. More...
|
| |
| template<class InputIt , class OutputIt > |
| OutputIt | genetics::sequence::dna::complement (InputIt first, InputIt last, OutputIt d_first) |
| | Generates the complementary sequence for a sequence of IUPAC degenerate DNA base symbols. More...
|
| |
| template<class InputIt , class OutputIt > |
| OutputIt | genetics::sequence::rna::complement (InputIt first, InputIt last, OutputIt d_first) |
| | Generates the complementary sequence for a sequence of IUPAC degenerate RNA base symbols. More...
|
| |