Antkeeper  0.0.1
base.hpp
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1 /*
2  * Copyright (C) 2023 Christopher J. Howard
3  *
4  * This file is part of Antkeeper source code.
5  *
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19 
20 #ifndef ANTKEEPER_GENETICS_BASE_HPP
21 #define ANTKEEPER_GENETICS_BASE_HPP
22 
23 namespace genetics {
24 
26 namespace base {
27 
35 int compare(char a, char b);
36 
43 char transcribe(char symbol);
44 
46 namespace dna
47 {
54  char complement(char symbol);
55 }
56 
58 namespace rna
59 {
66  char complement(char symbol);
67 }
68 
69 } // namespace base
70 } // namespace genetics
71 
72 #endif // ANTKEEPER_GENETICS_BASE_HPP
char complement(char symbol)
Returns the DNA complement of an IUPAC degenerate base symbol.
Definition: base.cpp:82
char complement(char symbol)
Returns the RNA complement of an IUPAC degenerate base symbol.
Definition: base.cpp:91
int compare(char a, char b)
Returns the number of bases that are represented by both IUPAC degenerate base symbols.
Definition: base.cpp:65
char transcribe(char symbol)
Transcribes an IUPAC degenerate base symbol between DNA and RNA, swapping T for U or U for T.
Definition: base.cpp:75
Genetic algorithms.
Definition: amino-acid.hpp:25