genetics::amino_acid Namespace Reference

Functions which operate on IUPAC amino acid symbols. More...

Functions
template<class Matrix >
std::remove_all_extents< Matrix >::type	score (char a, char b, const Matrix &matrix)
	Scores two amino acids using a substitution matrix. More...

Detailed Description

Functions which operate on IUPAC amino acid symbols.

Function Documentation

score()

template<class Matrix >

std::remove_all_extents< Matrix >::type genetics::amino_acid::score	(	char	a,
		char	b,
		const Matrix &	matrix
	)

Scores two amino acids using a substitution matrix.

Parameters

a	IUPAC amino acid code of first amino acid.
b	IUPAC amino acid code of second amino acid.
matrix	Substitution matrix.

Returns

Score of the two amino acids.

Definition at line 42 of file amino-acid.hpp.